A[ T o t a t e © K 1 t m t ( t e [ p fi a d s 1 dJournal of Photochemistry and Photobiology A: Chemistry 190 (2007) 342–351 Ab initio study of exciton transfer dynamics from a core–shell semiconductor quantum dot to a porphyrin-sensitizer Dmitri S. Kilin a, Kiril Tsemekhman a, Oleg V. Prezhdo a,∗, Eduard I. Zenkevich b, Christian von Borczyskowski c a Department of Chemistry, University of Washington, Seattle, WA 98195-1700, USA b Institute of Molecular and Atomic Physics, National Academy of Science of Belarus, F. Skaryna Ave. 70, 220072 Minsk, Belarus c Center for Nanostructured Materials and Analytics, Institute of Physics, Chemnitz University of Technology, D-09107 Chemnitz, Germany Received 25 October 2006; received in revised form 15 February 2007; accepted 19 February 2007 Available online 23 February 2007 bstract The observed resonance energy transfer in nanoassemblies of CdSe/ZnS quantum dots and pyridyl-substituted free-base porphyrin molecules Zenkevich et al., J. Phys. Chem. B 109 (2005) 8679] is studied computationally by ab initio electronic structure and quantum dynamics approaches. he system harvests light in a broad energy range and can transfer the excitation from the dot through the porphyrin to oxygen, generating singlet xygen for medical applications. The geometric structure, electronic energies, and transition dipole moments are derived by density functional heory and are utilized for calculating the Fo¨rster coupling between the excitons residing on the quantum dot and the porphyrin. The direction nd rate of the irreversible exciton transfer is determined by the initial photoexcitation of the dot, the dot–porphyrin coupling and the interaction o the electronic subsystem with the vibrational environment. The simulated electronic structure and dynamics are in good agreement with the xperimental data and provide real-time atomistic details of the energy transfer mechanism. 2007 Elsevier B.V. All rights reserved. r; Cor p [ t c fi r m d d e ieywords: Singlet oxygen; Photocytotoxicity; Cancer therapy; Exciton transfe . Introduction Recent advances in the synthesis of nanostructures with con- rollable size, shape, and optical properties make them desirable aterials for new technologies including spintronics [1], quan- um computing [2,3] and photovoltaics [4–10]. Quantum dots QDs) form the foundation of many novel devices such as hermopower machines [11], field-effect transistors [12], light- mitting diodes [13], lasers [14], and quantum emitter antennas 15]. Functionalizing inorganic QDs with organic ligands pre- ares them for applications in various biological and medical elds [16], including in vivo fluorescent biological imaging [17] nd cytotoxicity [18]. Organically sensitized QDs are used in rug design. In particular, assemblies of QDs with photosen- iting dyes maximize production of singlet oxygen, thereby ∗ Corresponding author. Tel.: +1 206 221 3931. E-mail address: prezhdo@u.washington.edu (O.V. Prezhdo). a a s u [ e r 010-6030/$ – see front matter © 2007 Elsevier B.V. All rights reserved. oi:10.1016/j.jphotochem.2007.02.017e–shell semiconductor quantum dot; Porphyrin photosensitizer roviding a novel approach to photo-dynamic therapy (PDT) 19,20]. PDT is a highly promising application of nanotechnology to he selective destruction of malignant tissues, such as cancer ells. It is a rapidly developing field [21] that can greatly bene- t from support by theory and simulation. Realization of PDT elies on singlet oxygen, which is generally accepted as the main ediator of photocytotoxicity in PDT and causes oxidation and egradation of membranes of malignant cells [22,23]. Since a irect excitation from the triplet ground state (3O2) to the singlet xcited state (1O2) is forbidden by spin selection rules, oxygen s activated with a sequence of energy transfer events involving photosensitizer [24]. The 1O2 agent can be effectively gener- ted using self-assembled aggregates of tetrapyrrole dyes and mall (3–10 nm) QDs covered by ligands [25]. The commonly sed tetrapyrrole dyes include phtalocyanin [26] and porphyrin 27–30]. QDs are used for the following reasons: (i) they store xcitation energy and distribute it to many dye molecules, which eside on the QD surface and produce singlet oxygen; (ii) QDs d Ph a i a t Q t a w C a s d b t o i i P Q o n t n t d s v t e d m [ l A e m a c a t d o a d m t d w a l m m t T t e p t c t o t m b d s t i d e Q d t l a p r a e t s e b e s o 2 u t d 2 l w t r d [ t eD.S. Kilin et al. / Journal of Photochemistry an re efficient photon harvesters, since their absorption spectrum s broader than the spectra of typical organic dyes used in PDT; nd (iii) the photon absorption of QDs can be tuned to the spec- ral transparency window of human skin. Although metallic Ds can be less toxic [31], semiconductor QDs have impor- ant advantages for medical applications. Semiconductor QDs re more easily sensitized with organic molecules and polymers, hich reduce QD toxicity and are required in the applications. ompared to their metallic counterparts that show photoinduced ctivity in the same spectral region, semiconductor QDs are sub- tantially smaller in size, and are therefore are much more easily elivered to biological tissues. The generation of singlet oxygen with the dye–QD assem- lies involves two steps. First, the photoexcitation moves from he QD to the dye. Second, the dye transfers the energy to the xygen present in the surrounding solvent. Clear understand- ng of the energy transfer mechanisms and pathways involved n this two-step process is essential to the design of effective DT drugs. The pathway taken by the photoexcitation in the D–dye nanoassembly is best described with the modern the- ry of energy transfer, which is greatly motivated by search for ovel energy sources, design of artificial light-harvesting sys- ems, and understanding the efficient light harvesting seen in ature [32–38]. The energy and electron transfer processes in he light-harvesting systems are driven by the ultrafast photoin- uced evolution of the electronic degrees of freedom, which are trongly affected by the dynamic reorganization of the quantized ibrational modes [39–41]. Therefore, theoretical description of he transfer processes requires explicit modeling of the coupled lectronic and vibrational dynamics together with bath-induced ephasing and renormalization of the system energies [40–45]. The long-range excitation transfer between chromophores in olecular aggregates is well described by the Fo¨rster theory 46], in which the transfer rate is proportional to the over- ap of the donor emission and acceptor absorption spectra. mong many applications, the theory successively describes the nhancement of absorption efficiency in the networks of chro- ophores acting as solar radiation antennas [32–35]. The theory ssumes that the electrons undergoing excitation transfer are in ontact with a thermal phonon bath, which can both rapidly ccomodate excess electron energy and provide thermal energy o the electrons. Explicit dynamics are particularly important for those egrees of freedom that are not thermalized on the timescale f the transfer [47]. A number of quantum and semiclassical pproaches have been developed for the description of transfer ynamics in large systems [48–54]. Mixed quantum-classical olecular dynamics, in which a few quantum mechanical elec- ronic or vibrational modes are coupled to many explicit classical egrees of freedom, are used for modeling of transfer reactions, hich produce substantial differences in the electrostatic inter- ctions in the donor and acceptor configurations and generate arge solvation and reorganization energies [55–61].An intermediate description between the rate theories and olecular dynamics is provided by the reduced density matrix ethods [38,41–43,62–64], which couple several explicit elec- ronic or vibrational modes to a thermal bath of many modes. s e l sotobiology A: Chemistry 190 (2007) 342–351 343 he reduced density matrix approach is particularly suitable for he present study, which is aimed at modeling the time-resolved xperimental data on the evolution of the electronic system cou- led to the phonon environment. Since the excitation transfer in he dot–dye assembly causes no bond breaking or other major hemical events, the nuclear motions change little and can be reated in the harmonic approximation. The phonon motions are rders of magnitude faster than the excitation transfer and remain hermalized during the course of the transfer. In certain limits, the aster equations derived for the reduced density matrices may e cast into the form of quantum jump equations [51,65–67] that eal with individual trajectories rather than ensembles. These ingle molecule simulations can provide additional insights into he course of a photoreaction. Since the experiments of current nterest [28] report ensemble averaged data, we use the reduced ensity matrix description. The paper presents an ab initio model for the photoinduced nergy transfer in the colloidal core–shell CdSe/ZnSe wurtzite D, whose surface is sensitized with ameta-dipyridyl-porphyrin ye [68]. The ab initio model is used to investigate the energy ransfer dynamics in real-time. The electronic structure calcu- ations are performed using density functional theory (DFT) nd explicitly include the CdSe core, the ZnSe shell and the orphyrin sensitizer. The density matrix model is designed to epresent the dipole–dipole Fo¨rster coupling mechanism and to ccount for the electron–phonon interactions. The simulation xplicitly describes transfer, relaxation, and dephasing of the wo-particle excitations on a nanosecond timescale. The next ection describes the details of the ab initio calculations of the lectronic structure and optical properties of the dye–dot assem- ly and introduces the reduced density matrix description of the xcitation transfer. Following the theory section, we discuss the imulation results and conclude with a summary and an outline f future research directions. . Theory and simulation details In this section, we describe QD–dye system used in the sim- lations (Fig. 1), characterize its atomic structure and report he details of the ab initio electronic structure and quantum ynamics simulations. .1. Atomic structure of the QD–porphyrin composite Inorganic QDs attract fundamental interest because of their ong-lived electronic excitations and high fluorescence yields, hich are made possible by weaker electron–phonon interac- ions compared to organic systems and by quantum confinement elative to the bulk. Quantization of the electronic energy levels ue to finite size of the dots results in the phonon bottleneck 4], which inhibits efficient non-radiative relaxation. In order o take advantage of the unique electronic and optical prop- rties of QD, the unsaturated coordination sites on the surface hould be removed. The dangling bonds can be saturated by sev- ral mechanisms, including (i) surface self-healing, (ii) surface igation, and (iii) QD capping by a shell of another inorganic emiconductor material with a similar geometric structure and a 344 D.S. Kilin et al. / Journal of Photochemistry and Ph Fig. 1. Calculated absorption spectrum and molecular structure of the dipyridyl p t l f c g o t f f p a i h l a a i s a l a o c i t C F s o t d c t s t n o s t i i t t T a i t s e d 2 t t t s t e c t T [ r o 2 t V o i o software package [75]. The geometry was further optimizedorphyrin (top panel), the core–shell CdSe/ZnS quantum dot (middle panel) and he dot–dye composite (bottom panel). arger band-gap. The unsaturated dangling bonds generate sur- ace states with energies inside the band-gap. The surface states reate excitation traps, provide new relaxation pathways, and enerally, deteriorate the optical properties of the dot. Saturation f the dangling bonds removes the surface states and opens up he band-gap. Surface self-healing and reconstruction facilitates ormation of additional bonds between the surface atoms. Sur- ace ligands compensate dangling bonds and, at the same time, reserve the ideal crystal structure of the dot. QD capping with shell of another semiconductor with a larger band-gap greatly mproves the optical properties of the dot. Compared to the ighly mobile atoms of a self-healed surface or flexible surface igands, both of which create strong electron–phonon coupling, rigid semiconductor shell slows down radiationless relaxation nd enhances fluorescence. Such core–shell QDs have been used n the PDT experiments of interest [28] and form the focus of our tudy. Mass-spectroscopy experiments indicate [69] that structures nd properties of smaller QDs are better defined than those of arger dots. Smaller QD clusters contain fixed numbers of atoms nd form only few stable configurations that both maintain the riginal crystal structure and minimize surface energy. The QD w t aotobiology A: Chemistry 190 (2007) 342–351 onsidered here comprises 222 atoms total, including 66 atoms n the Cd33Se33 core and 156 atoms in the Zn78S78 shell. Both he core and the shell maintain the wurtzite structure of bulk dSe and ZnS upon geometry optimization, middle panel of ig. 1. The free-base porphyrin is a tetrapyrrole organic dye that hows a high optical absorption yield and is an essential part f many natural and artificial light-harvesting complexes. Due o its lone electron pairs localized in the nitrogen atoms, the ipyridyl-substituted porphyrin shown in the top panel of Fig. 1 an easily self-assemble with the QD. The nitrogen atoms of he bridging pyridyl groups strongly bind to Zn surface atoms eparated by a matching distance. The orbitals of the porphyrin hat are responsible for its optical properties are affected by either the dipyridyl substituents nor the surface binding. The dye–dot assembly used in the current study, bottom panel f Fig. 1, is a simplified version of the experimentally studied ystem [28,29]. It is designed to capture the key properties of he real system at the fully atomistic level, while allowing the ab nitio description of its electronic structure. The simulated QD s about half the size of the dots used in the experiments. Both he CdSe core and the ZnS shell are essential for the descrip- ion of the quantum dot electronic structure and are included. he TOPO-ligands that cover the outer ZnS layer of the dot in ddition to the porphyrin dyes are excluded. The ligands do not nfluence the electronic properties of the dot in the experimen- ally relevant energy range, since the CdSe dangling bonds are aturated by the ZnS shell. The surface ligands should have little ffect on the dye–dot donor–acceptor coupling as well, since the ye is directly bound to the dot. .2. Electronic structure The electronic structure of the core–shell QD sensitized with he porphyrin dye is investigated by ab initio density functional heory (DFT). Among other advantages, DFT works well with ransition elements containing d-electrons and is scalable to the ystem size required for the present study. The DFT simula- ions were performed with the VASP code that is particularly fficient with semiconductor and metallic systems [70–72]. The ore electrons were simulated using the Vanderbilt pseudopo- entials [73], while the valence electrons were treated explicitly. he generalized gradient functional due to Perdew and Wang 74] was used to account for the electron exchange and cor- elation effects. The simulations were performed using a basis f 9 × 105 plane waves corresponding to the energy cutoff of 20 eV. The electronic structure was converged to the 0.001 eV olerance limit. In order to use efficient fast Fourier transforms, ASP employs periodic boundary conditions. A vacuum layer f at least 7 A˚ was added between the images to avoid spurious nteractions between the periodic images of the system. The geometry of the combined system was first fully ptimized using molecular mechanics within the HyperChemith VASP. The ab initio DFT optimization was essential for reating the spatial anisotropy of the forces produced by the Zn nd N atoms that form the dye–dot coordination bond. While d Ph v D t b a a m s t g w t p k C a W t p m y m i s s i c s l a m d m i [ i f c t W f U t a μ a t t a e s p m P t w e 2 c m t μ p m T H i p f H f t p p H w T l a c d R w r T e a v and dye states that have the largest transition dipole moments.D.S. Kilin et al. / Journal of Photochemistry an an der Waal’s interactions are known to challenge conventional FT, requiring special DFT approaches [76,77], the coordina- ion binding of the dye to the dot is analogous to hydrogen onding [59,78] which is stronger than van der Waal’s inter- ctions, and is well represented by standard DFT. Since all dot nd dye atoms were allowed to move, the DFT geometry opti- ization accounted for the intra-dye relaxation induced by the emiconductor surface, the changes in the surface induced by he interaction with the dye, and the optimization of the binding eometry. The optical properties of the dye–dot composite are described ithin the Kohn-Sham orbital picture. The orbital representa- ion is well justified for the semiconductor QD, since its optical roperties are dominated by quantum confinement [4]. The inetic energy of quantum confinement is much greater than the oulomb energy of electrostatic attraction between the electron nd hole occupying the orbitals involved in the photoexcitation. hile more advanced approaches, such as the Bethe–Salpeter heory [79] or DFT including exact exchange terms [80], can roduce better agreement with the experimental data, they are uch more computationally demanding and cannot be applied et to a system of this size. It should be noted that due to the presence of the heavy ele- ents, the spin–orbit interaction (SOI) plays an important role n the optical properties of QDs by mixing singlet and triplet tates [81]. The strength and importance of SOI is system and ize dependent. For instance, SOI is less prominent in PbSe QDs, n which the exciton radius is large, around 46 nm, and quantum onfinement effects dominate [82]. The exciton radius in CdSe is maller. SOI in CdSe QDs suppresses the singlet character of the owest energy exciton to as low as 30% [81]. Similarly, the rel- tively closely spaced singlet and triplet states of the porphyrin olecule are noticeably coupled by SOI, which creates the con- itions required for creation of singlet oxygen. Because of the ixed spin character of the exciton, the exciton transfer studied n present work effectively couples both singlet and triplet states 83,84]. The transfer dynamics is analyzed here without detail- ng the total angular momentum of the exciton and with explicit ocus on the time-domain. Both the photoexcitation intensity and the donor-acceptor oupling in the Fo¨rster theory [46] depend on the transi- ion dipole moments between the electron and hole states. ithin the plane-wave DFT formalism, the Kohn-Sham wave- unctions are given in the momentum representation |ψν,G〉. sing the equivalence between the coordinate and momen- um representation, the transition dipole moments are calculated ccording to the formula dμν = ∑ |G|